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tissue expression data  (Human Protein Atlas)

 
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    Human Protein Atlas tissue expression data
    Tissue Expression Data, supplied by Human Protein Atlas, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Average 86 stars, based on 1 article reviews
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    tissue expression data  (Human Protein Atlas)
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    Tissue Expression Data, supplied by Human Protein Atlas, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    tissue level rna expression data  (Human Protein Atlas)
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    Human Protein Atlas tissue level rna expression data
    Tissue Level Rna Expression Data, supplied by Human Protein Atlas, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    gene tissue expression data gtex  (Human Protein Atlas)
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    Human Protein Atlas gene tissue expression data gtex
    a Reaggregation of iPSc-derived TEPs with primary human ETPs to form hTOs (human Thymic Organoids) cultured in a 3D fibrin hydrogel at an air-liquid interface in medium supplemented with RANKL, IL7, SCF, and FLT3L (Created in BioRender. Guillonneau, C. <t>(2025)</t> <t>https://BioRender.com/apk8n61</t> ). b Bright-field images of hTOs (human Thymic Organoids) at 24 h and D4 showing a compact spheroid core with a peripheral cellular crown (identical magnification) ( n = 12 from independent differentiations and ETP donors). c scRNA-seq of EPCAM + CD45 − cells from D7 organoids with UMAP embedding and cell-cycle scoring (10x Genomics; Seurat workflow). d Module score for a TEP gene set: PDPN , PAX9 , IL7 , EBF1 , FN1 . e Integration of the EPCAM + CD45 − scRNA-seq dataset (Clusters 1, 2, and 3) with the Bautista human TEC atlas; with reference cells in gray. f Cell type deconvolution of TEPs and CD205 + TEPs against the EPCAM + CD45 − scRNA-seq dataset. g Distribution of the Tau tissue-specific variability index within clusters 3 and 1. Tau was computed from <t>GTEx</t> tissue expression data; TRA enrichment was assessed on the top-200 cluster-specific genes. Source data are provided as a file. h Assessment of the TRA repertoire in Cluster 3, showing enrichment for brain antigens. Source data are provided as a file.
    Gene Tissue Expression Data Gtex, supplied by Human Protein Atlas, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    tissue specific gene expression data  (Human Protein Atlas)
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    Human Protein Atlas tissue specific gene expression data
    a Reaggregation of iPSc-derived TEPs with primary human ETPs to form hTOs (human Thymic Organoids) cultured in a 3D fibrin hydrogel at an air-liquid interface in medium supplemented with RANKL, IL7, SCF, and FLT3L (Created in BioRender. Guillonneau, C. <t>(2025)</t> <t>https://BioRender.com/apk8n61</t> ). b Bright-field images of hTOs (human Thymic Organoids) at 24 h and D4 showing a compact spheroid core with a peripheral cellular crown (identical magnification) ( n = 12 from independent differentiations and ETP donors). c scRNA-seq of EPCAM + CD45 − cells from D7 organoids with UMAP embedding and cell-cycle scoring (10x Genomics; Seurat workflow). d Module score for a TEP gene set: PDPN , PAX9 , IL7 , EBF1 , FN1 . e Integration of the EPCAM + CD45 − scRNA-seq dataset (Clusters 1, 2, and 3) with the Bautista human TEC atlas; with reference cells in gray. f Cell type deconvolution of TEPs and CD205 + TEPs against the EPCAM + CD45 − scRNA-seq dataset. g Distribution of the Tau tissue-specific variability index within clusters 3 and 1. Tau was computed from <t>GTEx</t> tissue expression data; TRA enrichment was assessed on the top-200 cluster-specific genes. Source data are provided as a file. h Assessment of the TRA repertoire in Cluster 3, showing enrichment for brain antigens. Source data are provided as a file.
    Tissue Specific Gene Expression Data, supplied by Human Protein Atlas, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/tissue specific gene expression data/product/Human Protein Atlas
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    consensus glp 1r tissue expression data  (Human Protein Atlas)
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    Human Protein Atlas consensus glp 1r tissue expression data
    a Reaggregation of iPSc-derived TEPs with primary human ETPs to form hTOs (human Thymic Organoids) cultured in a 3D fibrin hydrogel at an air-liquid interface in medium supplemented with RANKL, IL7, SCF, and FLT3L (Created in BioRender. Guillonneau, C. <t>(2025)</t> <t>https://BioRender.com/apk8n61</t> ). b Bright-field images of hTOs (human Thymic Organoids) at 24 h and D4 showing a compact spheroid core with a peripheral cellular crown (identical magnification) ( n = 12 from independent differentiations and ETP donors). c scRNA-seq of EPCAM + CD45 − cells from D7 organoids with UMAP embedding and cell-cycle scoring (10x Genomics; Seurat workflow). d Module score for a TEP gene set: PDPN , PAX9 , IL7 , EBF1 , FN1 . e Integration of the EPCAM + CD45 − scRNA-seq dataset (Clusters 1, 2, and 3) with the Bautista human TEC atlas; with reference cells in gray. f Cell type deconvolution of TEPs and CD205 + TEPs against the EPCAM + CD45 − scRNA-seq dataset. g Distribution of the Tau tissue-specific variability index within clusters 3 and 1. Tau was computed from <t>GTEx</t> tissue expression data; TRA enrichment was assessed on the top-200 cluster-specific genes. Source data are provided as a file. h Assessment of the TRA repertoire in Cluster 3, showing enrichment for brain antigens. Source data are provided as a file.
    Consensus Glp 1r Tissue Expression Data, supplied by Human Protein Atlas, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/consensus glp 1r tissue expression data/product/Human Protein Atlas
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    ctsc expression across diverse normal tissues transcript abundance data  (Human Protein Atlas)
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    Human Protein Atlas ctsc expression across diverse normal tissues transcript abundance data
    a Reaggregation of iPSc-derived TEPs with primary human ETPs to form hTOs (human Thymic Organoids) cultured in a 3D fibrin hydrogel at an air-liquid interface in medium supplemented with RANKL, IL7, SCF, and FLT3L (Created in BioRender. Guillonneau, C. <t>(2025)</t> <t>https://BioRender.com/apk8n61</t> ). b Bright-field images of hTOs (human Thymic Organoids) at 24 h and D4 showing a compact spheroid core with a peripheral cellular crown (identical magnification) ( n = 12 from independent differentiations and ETP donors). c scRNA-seq of EPCAM + CD45 − cells from D7 organoids with UMAP embedding and cell-cycle scoring (10x Genomics; Seurat workflow). d Module score for a TEP gene set: PDPN , PAX9 , IL7 , EBF1 , FN1 . e Integration of the EPCAM + CD45 − scRNA-seq dataset (Clusters 1, 2, and 3) with the Bautista human TEC atlas; with reference cells in gray. f Cell type deconvolution of TEPs and CD205 + TEPs against the EPCAM + CD45 − scRNA-seq dataset. g Distribution of the Tau tissue-specific variability index within clusters 3 and 1. Tau was computed from <t>GTEx</t> tissue expression data; TRA enrichment was assessed on the top-200 cluster-specific genes. Source data are provided as a file. h Assessment of the TRA repertoire in Cluster 3, showing enrichment for brain antigens. Source data are provided as a file.
    Ctsc Expression Across Diverse Normal Tissues Transcript Abundance Data, supplied by Human Protein Atlas, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/ctsc expression across diverse normal tissues transcript abundance data/product/Human Protein Atlas
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    genotype tissue expression gtex data  (Human Protein Atlas)
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    Human Protein Atlas genotype tissue expression gtex data
    The mRNA expression levels of CISD1 in human pan-cancer. (A) CISD1 mRNA expression in various human normal <t>tissues.</t> <t>Genotype</t> Tissue Expression <t>(GTEx)</t> data for CISD1 mRNA in human normal tissues were downloaded from The Human Protein Atlas (THPA) and analyzed using GraphPad Prism. (B) CISD1 mRNA expression in various human cancer tissues. The Cancer Genome Atlas (TCGA) data for CISD1 mRNA expression across different cancer types were retrieved from THPA and analyzed using GraphPad Prism. (C) CISD1 mRNA expression levels in tumor tissues were compared with normal tissues across 33 cancer types. Differential expression analysis was conducted using GEPIA2, with a significance threshold of Q < 0.05 (Benjamini-Hochberg correction for multiple testing). Cancer types with significantly increased CISD1 expression are indicated in brown font, while those with significantly decreased expression are in blue font. N = normal tissue, and T = tumor tissue.
    Genotype Tissue Expression Gtex Data, supplied by Human Protein Atlas, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Image Search Results


    a Reaggregation of iPSc-derived TEPs with primary human ETPs to form hTOs (human Thymic Organoids) cultured in a 3D fibrin hydrogel at an air-liquid interface in medium supplemented with RANKL, IL7, SCF, and FLT3L (Created in BioRender. Guillonneau, C. (2025) https://BioRender.com/apk8n61 ). b Bright-field images of hTOs (human Thymic Organoids) at 24 h and D4 showing a compact spheroid core with a peripheral cellular crown (identical magnification) ( n = 12 from independent differentiations and ETP donors). c scRNA-seq of EPCAM + CD45 − cells from D7 organoids with UMAP embedding and cell-cycle scoring (10x Genomics; Seurat workflow). d Module score for a TEP gene set: PDPN , PAX9 , IL7 , EBF1 , FN1 . e Integration of the EPCAM + CD45 − scRNA-seq dataset (Clusters 1, 2, and 3) with the Bautista human TEC atlas; with reference cells in gray. f Cell type deconvolution of TEPs and CD205 + TEPs against the EPCAM + CD45 − scRNA-seq dataset. g Distribution of the Tau tissue-specific variability index within clusters 3 and 1. Tau was computed from GTEx tissue expression data; TRA enrichment was assessed on the top-200 cluster-specific genes. Source data are provided as a file. h Assessment of the TRA repertoire in Cluster 3, showing enrichment for brain antigens. Source data are provided as a file.

    Journal: Nature Communications

    Article Title: Combinatory differentiation of human induced pluripotent stem cells generates functional thymic epithelium driving dendritic cell and CD4/CD8 T cell development

    doi: 10.1038/s41467-026-68675-y

    Figure Lengend Snippet: a Reaggregation of iPSc-derived TEPs with primary human ETPs to form hTOs (human Thymic Organoids) cultured in a 3D fibrin hydrogel at an air-liquid interface in medium supplemented with RANKL, IL7, SCF, and FLT3L (Created in BioRender. Guillonneau, C. (2025) https://BioRender.com/apk8n61 ). b Bright-field images of hTOs (human Thymic Organoids) at 24 h and D4 showing a compact spheroid core with a peripheral cellular crown (identical magnification) ( n = 12 from independent differentiations and ETP donors). c scRNA-seq of EPCAM + CD45 − cells from D7 organoids with UMAP embedding and cell-cycle scoring (10x Genomics; Seurat workflow). d Module score for a TEP gene set: PDPN , PAX9 , IL7 , EBF1 , FN1 . e Integration of the EPCAM + CD45 − scRNA-seq dataset (Clusters 1, 2, and 3) with the Bautista human TEC atlas; with reference cells in gray. f Cell type deconvolution of TEPs and CD205 + TEPs against the EPCAM + CD45 − scRNA-seq dataset. g Distribution of the Tau tissue-specific variability index within clusters 3 and 1. Tau was computed from GTEx tissue expression data; TRA enrichment was assessed on the top-200 cluster-specific genes. Source data are provided as a file. h Assessment of the TRA repertoire in Cluster 3, showing enrichment for brain antigens. Source data are provided as a file.

    Article Snippet: The Tau was calculated for a list of genes using the gene tissue expression data (GTEx) from the Human Protein Atlas database ( https://www.proteinatlas.org/about/download ).

    Techniques: Derivative Assay, Cell Culture, Expressing

    The mRNA expression levels of CISD1 in human pan-cancer. (A) CISD1 mRNA expression in various human normal tissues. Genotype Tissue Expression (GTEx) data for CISD1 mRNA in human normal tissues were downloaded from The Human Protein Atlas (THPA) and analyzed using GraphPad Prism. (B) CISD1 mRNA expression in various human cancer tissues. The Cancer Genome Atlas (TCGA) data for CISD1 mRNA expression across different cancer types were retrieved from THPA and analyzed using GraphPad Prism. (C) CISD1 mRNA expression levels in tumor tissues were compared with normal tissues across 33 cancer types. Differential expression analysis was conducted using GEPIA2, with a significance threshold of Q < 0.05 (Benjamini-Hochberg correction for multiple testing). Cancer types with significantly increased CISD1 expression are indicated in brown font, while those with significantly decreased expression are in blue font. N = normal tissue, and T = tumor tissue.

    Journal: Genes & Diseases

    Article Title: Exploring CISD1 as a multifaceted biomarker in cancer: Implications for diagnosis, prognosis, and immunotherapeutic response

    doi: 10.1016/j.gendis.2025.101677

    Figure Lengend Snippet: The mRNA expression levels of CISD1 in human pan-cancer. (A) CISD1 mRNA expression in various human normal tissues. Genotype Tissue Expression (GTEx) data for CISD1 mRNA in human normal tissues were downloaded from The Human Protein Atlas (THPA) and analyzed using GraphPad Prism. (B) CISD1 mRNA expression in various human cancer tissues. The Cancer Genome Atlas (TCGA) data for CISD1 mRNA expression across different cancer types were retrieved from THPA and analyzed using GraphPad Prism. (C) CISD1 mRNA expression levels in tumor tissues were compared with normal tissues across 33 cancer types. Differential expression analysis was conducted using GEPIA2, with a significance threshold of Q < 0.05 (Benjamini-Hochberg correction for multiple testing). Cancer types with significantly increased CISD1 expression are indicated in brown font, while those with significantly decreased expression are in blue font. N = normal tissue, and T = tumor tissue.

    Article Snippet: Genotype Tissue Expression (GTEx) data for CISD1 mRNA in human normal tissues were downloaded from The Human Protein Atlas (THPA) and analyzed using GraphPad Prism. (B) CISD1 mRNA expression in various human cancer tissues.

    Techniques: Expressing, Quantitative Proteomics